Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs143973611 chr2:10956196 C/CAT 0.000218 117 42.9 38.58 62.72 KM Plot
THYM rs143983947 chr14:74420524 ATGT/A 0.000149 114 38.33 52.93 28.43 KM Plot
THYM rs144137673 chr11:11844956 AAC/A 0.000112 118 41.77 42.73 13.35 KM Plot
THYM rs144144123 chr7:29705441 C/T 5.23E-13 118 37.63 46.27 6 KM Plot
THYM rs144150367 chr10:1546650 C/CGTGT 0.00015 119 38.33 45.87 25.83 KM Plot
THYM rs144254517 chr4:70110278 T/C 4.7E-13 119 41.77 35 6 KM Plot
THYM rs144280357 chr1:227476466 C/T 0.000123 119 42.82 37.13 19.63 KM Plot
THYM rs144297545 chr7:29685077 A/G 8.5E-13 117 38.83 42.73 6 KM Plot
THYM rs144298801 chr4:70055235 C/T 7.82E-13 117 39.75 42.3 6 KM Plot
THYM rs144345460 chr10:1536058 G/A 0.000205 116 38.33 44.58 25.83 KM Plot
THYM rs144355444 chr7:29693567 C/T 4.29E-13 119 38.13 46.27 6 KM Plot
THYM rs144557326 chr6:85129280 CATT/C 0.000199 118 36.4 49.75 53.63 KM Plot
THYM rs144655031 chr19:29299624 G/T 6.32E-6 116 48 35 22.9 KM Plot
THYM rs144656390 chr2:30777838 TAAAG/T 1.33E-8 119 36.4 50.1 33.13 KM Plot
THYM rs144679132 chr2:30795845 CTTTT/C 1.33E-8 119 36.4 50.1 33.13 KM Plot